Prof. Dr. Constantin Pape

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  • 2021 | Journal Article | Research Paper
    ​ ​Profiling cellular diversity in sponges informs animal cell type and nervous system evolution​
    Musser, J. M; Schippers, K. J.; Nickel, M.; Mizzon, G.; Kohn, A. B.; Pape, C.   & Ronchi, P. et al.​ (2021) 
    Science, 374(6568) pp. 717​-723​.​ DOI: https://doi.org/10.1126/science.abj2949 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper
    ​ ​The Mutex Watershed and its Objective: Efficient, Parameter-Free Graph Partitioning​
    Wolf, S.; Bailoni, A.; Pape, C. ; Rahaman, N.; Kreshuk, A.; Kothe, U. & Hamprecht, F. A.​ (2021) 
    IEEE Transactions on Pattern Analysis and Machine Intelligence, 43(10) pp. 3724​-3738​.​ DOI: https://doi.org/10.1109/TPAMI.2020.2980827 
    ​Details  DOI  PMID  PMC  arXiv 
  • 2021 | Journal Article | Research Paper
    ​ ​Whole-body integration of gene expression and single-cell morphology​
    Vergara, H. M.; Pape, C. ; Meechan, K. I.; Zinchenko, V.; Genoud, C.; Wanner, A. A. & Mutemi, K. N. et al.​ (2021) 
    Cell, 184(18) pp. 4819.e22​-4837.e22​.​ DOI: https://doi.org/10.1016/j.cell.2021.07.017 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper
    ​ ​Prevalence of SARS-CoV-2 Infection in Children and Their Parents in Southwest Germany​
    Tönshoff, B.; Müller, B.; Elling, R.; Renk, H.; Meissner, P.; Hengel, H. & Garbade, S. F. et al.​ (2021) 
    JAMA Pediatrics, 175(6) pp. 586​-593​.​ DOI: https://doi.org/10.1001/jamapediatrics.2021.0001 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper
    ​ ​Microscopy-based assay for semi-quantitative detection of SARS-CoV-2 specific antibodies in human sera: A semi-quantitative, high throughput, microscopy-based assay expands existing approaches to measure SARS-CoV-2 specific antibody levels in human sera​
    Pape, C. ; Remme, R.; Wolny, A.; Olberg, S.; Wolf, S.; Cerrone, L. & Cortese, M. et al.​ (2021) 
    BioEssays, 43(3) art. e2000257​.​ DOI: https://doi.org/10.1002/bies.202000257 
    ​Details  DOI  PMID  PMC 
  • 2021 | Journal Article | Research Paper | 
    ​ ​OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies​
    Moore, J.; Allan, C.; Besson, S.; Burel, J.-M.; Diel, E.; Gault, D. & Kozlowski, K. et al.​ (2021) 
    Nature Methods, 18(12) pp. 1496​-1498​.​ DOI: https://doi.org/10.1038/s41592-021-01326-w 
    ​Details  DOI  PMID  PMC 
  • 2020 | Conference Paper
    ​ ​The Semantic Mutex Watershed for Efficient Bottom-Up Semantic Instance Segmentation​
    Wolf, S.; Li, Y.; Pape, C. ; Bailoni, A.; Kreshuk, A. & Hamprecht, F. A.​ (2020)
    In:Vedaldi, Andrea; Bischof, Horst; Brox, Thomas; Frahm, Jan-Michael​ (Eds.), ​Proceedings pp. 208​-224. (Vol. VI). ​16th European Conference Computer Vision (ECCV 2020)​, Glasgow.
    Cham​: Springer. DOI: https://doi.org/10.1007/978-3-030-58539-6_13 
    ​Details  DOI 
  • 2020 | Journal Article | Research Paper | 
    ​ ​Accurate and versatile 3D segmentation of plant tissues at cellular resolution​
    Wolny, A.; Cerrone, L.; Vijayan, A.; Tofanelli, R.; Barro, A. V.; Louveaux, M. & Wenzl, C. et al.​ (2020) 
    eLife, 9.​ DOI: https://doi.org/10.7554/eLife.57613 
    ​Details  DOI  PMID  PMC 
  • 2020 | Journal Article | Research Paper
    ​ ​Integrative Imaging Reveals SARS-CoV-2-Induced Reshaping of Subcellular Morphologies​
    Cortese, M.; Lee, J.-Y.; Cerikan, B.; Neufeldt, C. J.; Oorschot, V. M. J.; Köhrer, S. & Hennies, J. et al.​ (2020) 
    Cell Host & Microbe, 28(6) pp. 853.e5​-866.e5​.​ DOI: https://doi.org/10.1016/j.chom.2020.11.003 
    ​Details  DOI  PMID  PMC 
  • 2019 | Preprint
    ​ ​A Generalized Framework for Agglomerative Clustering of Signed Graphs applied to Instance Segmentation​
    Bailoni, A.; Pape, C. ; Wolf, S.; Beier, T.; Kreshuk, A.& Hamprecht, F. A.​ (2019)
    ​Details  arXiv 
  • 2019 | Journal Article | Research Paper
    ​ ​Leveraging Domain Knowledge to Improve Microscopy Image Segmentation With Lifted Multicuts​
    Pape, C. ; Matskevych, A.; Wolny, A.; Hennies, J.; Mizzon, G.; Louveaux, M. & Musser, J. et al.​ (2019) 
    Frontiers of Computer Science, 1.​ DOI: https://doi.org/10.3389/fcomp.2019.00006 
    ​Details  DOI 
  • 2018 | Conference Paper
    ​ ​Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain​
    Heinrich, L.; Funke, J.; Pape, C. ; Nunez-Iglesias, J. & Saalfeld, S.​ (2018)
    In:Frangi, Alejandro F.; Schnabel, Julia A.; Davatzikos, Christos; Alberola-López, Carlos; Fichtinger, Gabor​ (Eds.), ​Proceedings pp. 317​-325. (Vol. II). ​Medical Image Computing and Computer Assisted Intervention – MICCAI 2018​, Granada, Spain.
    Cham​: Springer. DOI: https://doi.org/10.1007/978-3-030-00934-2_36 
    ​Details  DOI 
  • 2018 | Conference Paper
    ​ ​The Mutex Watershed: Efficient, Parameter-Free Image Partitioning​
    Wolf, S.; Pape, C. ; Bailoni, A.; Rahaman, N.; Kreshuk, A.; Köthe, U. & Hamprecht, F. A.​ (2018)
    In:Ferrari, Vittorio; Hebert, Martial; Sminchisescu, Cristian; Weiss, Yair​ (Eds.), ​Proceedings pp. 571​-587. (Vol. IV). ​15th European Conference Computer Vision – ECCV 2018​, Munich.
    Cham​: Springer. DOI: https://doi.org/10.1007/978-3-030-01225-0_34 
    ​Details  DOI 
  • 2017 | Conference Paper
    ​ ​Solving Large Multicut Problems for Connectomics via Domain Decomposition​
    Pape, C. ; Beier, T.; Li, P.; Jain, V.; Bock, D. D. & Kreshuk, A.​ (2017)
    pp. 1​-10. ​2017 IEEE International Conference on Computer Vision Workshops (ICCVW)​, Venice, Italy. DOI: https://doi.org/10.1109/ICCVW.2017.7 
    ​Details  DOI 
  • 2017 | Journal Article | Research Paper
    ​ ​Multicut brings automated neurite segmentation closer to human performance​
    Beier, T.; Pape, C. ; Rahaman, N.; Prange, T.; Berg, S.; Bock, D. D. & Cardona, A. et al.​ (2017) 
    Nature Methods, 14(2) pp. 101​-102​.​ DOI: https://doi.org/10.1038/nmeth.4151 
    ​Details  DOI  PMID  PMC 

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