Author Waack, Stephan

1 to 20 of 23 Items
  • 2003 | Journal Article
    ​ ​Gene prediction with a hidden Markov model and a new intron submodel​
    Stanke, M. & Waack, S.​ (2003) 
    Bioinformatics, 19 pp. II215​-II225​.​ DOI: https://doi.org/10.1093/bioinformatics/btg1080 
    ​Details  DOI  WoS 
  • 2006 | Journal Article
    ​ ​Parity graph-driven read-once branching programs and an exponential lower bound for integer multiplication​
    Bollig, B.; Waack, S. & Woelfel, P.​ (2006) 
    Theoretical Computer Science, 362(1-3) pp. 86​-99​.​ DOI: https://doi.org/10.1016/j.tcs.2006.05.035 
    ​Details  DOI  WoS 
  • 2006 | Journal Article | 
    ​ ​AUGUSTUS: ab initio prediction of alternative transcripts​
    Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B. ​ (2006) 
    NUCLEIC ACIDS RESEARCH, 34 pp. W435​-W439​.​ DOI: https://doi.org/10.1093/nar/gkl200 
    ​Details  DOI 
  • 2006 | Journal Article | 
    ​ ​Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models​
    Waack, S.; Keller, O.; Asper, R.; Brodag, T.; Damm, C. ; Fricke, W. F. & Surovcik, K. et al.​ (2006) 
    BMC Bioinformatics, 7 art. 142​.​ DOI: https://doi.org/10.1186/1471-2105-7-142 
    ​Details  DOI  PMID  PMC  WoS 
  • 2006 | Journal Article | 
    ​ ​P-value based visualization of codon usage data​
    Meinicke, P. ; Brodag, T.; Fricke, W. F. & Waack, S.​ (2006) 
    Algorithms for Molecular Biology, 1 art. 10​.​ DOI: https://doi.org/10.1186/1748-7188-1-10 
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  • 2008 | Journal Article | 
    ​ ​Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species​
    Keller, O.; Odronitz, F.; Stanke, M.; Kollmar, M. & Waack, S.​ (2008) 
    BMC Bioinformatics, 9 art. 278​.​ DOI: https://doi.org/10.1186/1471-2105-9-278 
    ​Details  DOI  PMID  PMC  WoS 
  • 2008 | Journal Article | 
    ​ ​WebScipio: an online tool for the determination of gene structures using protein sequences.​
    Odronitz, F.; Pillmann, H.; Keller, O.; Waack, S. & Kollmar, M.​ (2008) 
    BMC genomics, 9 pp. 422​-422​.​ DOI: https://doi.org/10.1186/1471-2164-9-422 
    ​Details  DOI  PMID  PMC 
  • 2011 | Journal Article | 
    ​ ​Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio​
    Hatje, K.; Keller, O.; Hammesfahr, B.; Pillmann, H.; Waack, S. & Kollmar, M.​ (2011) 
    BMC Research Notes, 4(1) art. 265​.​ DOI: https://doi.org/10.1186/1756-0500-4-265 
    ​Details  DOI 
  • 2011 | Journal Article
    ​ ​A novel hybrid gene prediction method employing protein multiple sequence alignments​
    Keller, O.; Kollmar, M.; Stanke, M. & Waack, S.​ (2011) 
    Bioinformatics, 27(6) pp. 757​-763​.​ DOI: https://doi.org/10.1093/bioinformatics/btr010 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | 
    ​ ​Coupled mutation finder: A new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations​
    Gueltas, M.; Haubrock, M. ; Tuysuz, N. & Waack, S.​ (2012) 
    BMC Bioinformatics, 13 art. 225​.​ DOI: https://doi.org/10.1186/1471-2105-13-225 
    ​Details  DOI  PMID  PMC  WoS 
  • 2013 | Journal Article | 
    ​ ​GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures​
    Hammesfahr, B.; Odronitz, F.; Mühlhausen, S. ; Waack, S. & Kollmar, M.​ (2013) 
    BMC Bioinformatics, 14 art. 77​.​ DOI: https://doi.org/10.1186/1471-2105-14-77 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​Quantum coupled mutation finder: predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming​
    Gueltas, M.; Duezguen, G.; Herzog, S. K.; Jaeger, S. J.; Meckbach, C. ; Wingender, E. & Waack, S.​ (2014) 
    BMC Bioinformatics, 15 art. 96​.​ DOI: https://doi.org/10.1186/1471-2105-15-96 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article | 
    ​ ​CRF-based models of protein surfaces improve protein-protein interaction site predictions​
    Dong, Z.; Wang, K.; Truong Khanh Linh Dang, T. K. L. D.; Gueltas, M.; Welter, M.; Wierschin, T. & Stanke, M. et al.​ (2014) 
    BMC Bioinformatics, 15 art. 277​.​ DOI: https://doi.org/10.1186/1471-2105-15-277 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Demonstrating non-inferiority of easy interpretable methods for insolvency prediction​
    Obermann, L. & Waack, S.​ (2015) 
    Expert Systems with Applications, 42(23) pp. 9117​-9128​.​ DOI: https://doi.org/10.1016/j.eswa.2015.08.009 
    ​Details  DOI  WoS 
  • 2015 | Journal Article | 
    ​ ​PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information​
    Meckbach, C. ; Tacke, R.; Hua, X. U.; Waack, S.; Wingender, E. & Gueltas, M.​ (2015) 
    BMC Bioinformatics, 16 art. 400​.​ DOI: https://doi.org/10.1186/s12859-015-0827-2 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article
    ​ ​Combining features in a graphical model to predict protein binding sites​
    Wierschin, T.; Wang, K.; Welter, M.; Waack, S. & Stanke, M.​ (2015) 
    Proteins Structure Function and Bioinformatics, 83(5) pp. 844​-852​.​ DOI: https://doi.org/10.1002/prot.24775 
    ​Details  DOI  PMID  PMC  WoS 
  • 2016 | Journal Article | 
    ​ ​A Novel Sequence-Based Feature for the Identification of DNA-Binding Sites in Proteins Using Jensen-Shannon Divergence​
    Dang, T. K. L.; Meckbach, C. ; Tacke, R.; Waack, S. & Gueltas, M.​ (2016) 
    Entropy, 18(10) art. 379​.​ DOI: https://doi.org/10.3390/e18100379 
    ​Details  DOI  WoS 
  • 2016 | Journal Article | 
    ​ ​Interpretable Multiclass Models for Corporate Credit Rating Capable of Expressing Doubt​
    Obermann, L. & Waack, S.​ (2016) 
    Frontiers in Applied Mathematics and Statistics, 2 art. 16​.​ DOI: https://doi.org/10.3389/fams.2016.00016 
    ​Details  DOI 
  • 2018 | Book Chapter
    ​ ​Simulating Software Refactorings Based on Graph Transformations​
    Honsel, D.; Fiekas, N.; Herbold, V.; Welter, M.; Ahlbrecht, T.; Waack, S.& Dix, J. et al.​ (2018)
    In:​Baum, Marcus; Brenner, Gunther; Grabowski, Jens; Hanschke, Thomas; Hartmann, Stefan; Schöbel, Anita​ (Eds.), Simulation Science : First International Workshop, SimScience 2017, Göttingen, Germany, April 27–28, 2017, Revised Selected Papers pp. 161​-175. ​Cham: ​Springer International Publishing. DOI: https://doi.org/10.1007/978-3-319-96271-9_10 
    ​Details  DOI 
  • 2018 | Book Chapter
    ​ ​Assessing Simulated Software Graphs Using Conditional Random Fields​
    Welter, M.; Honsel, D.; Herbold, V.; Staedtler, A.; Grabowski, J.& Waack, S.​ (2018)
    In:​Baum, Marcus; Brenner, Gunther; Grabowski, Jens; Hanschke, Thomas; Hartmann, Stefan; Schöbel, Anita​ (Eds.), Simulation Science : First International Workshop, SimScience 2017, Göttingen, Germany, April 27–28, 2017, Revised Selected Papers pp. 239​-250. ​Cham: ​Springer International Publishing. DOI: https://doi.org/10.1007/978-3-319-96271-9_15 
    ​Details  DOI 

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