Author Stegmaier, Philip
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2006 | Journal Article |
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm
Waleev, T.; Shtokalo, D.; Konovalova, T.; Voss, N.; Cheremushkin, E.; Stegmaier, P. & Kel-Margoulis, O. V. et al. (2006)
Nucleic Acids Research, 34 pp. W541-W545. DOI: https://doi.org/10.1093/nar/gkl342
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2008 | Journal Article
ExPlain (TM): finding upstream drug targets in disease gene regulatory networks
Kel, A. E.; Voss, N.; Valeev, T.; Stegmaier, P.; Kel-Margoulis, O. V. & Wingender, E. (2008)
SAR and QSAR in Environmental Research, 19(5-6) pp. 481-494. DOI: https://doi.org/10.1080/10629360802083806
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2010 | Journal Article |
Molecular mechanistic associations of human diseases
Stegmaier, P.; Krull, M.; Voss, N.; Kel, A. E. & Wingender, E. (2010)
BMC Systems Biology, 4 art. 124. DOI: https://doi.org/10.1186/1752-0509-4-124
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2011 | Journal Article |
Advanced Computational Biology Methods Identify Molecular Switches for Malignancy in an EGF Mouse Model of Liver Cancer
Stegmaier, P.; Voss, N.; Meier, T.; Kel, A. E.; Wingender, E. & Borlak, J. (2011)
PLoS ONE, 6(3) art. e17738. DOI: https://doi.org/10.1371/journal.pone.0017738
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2013 | Journal Article |
A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs
Stegmaier, P.; Kel, A. E.; Wingender, E. & Borlak, J. (2013)
PLoS Computational Biology, 9(3) art. e1002958. DOI: https://doi.org/10.1371/journal.pcbi.1002958
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2015 | Journal Article |
“Upstream Analysis”: An Integrated Promoter-Pathway Analysis Approach to Causal Interpretation of Microarray Data
Koschmann, J.; Bhar, A.; Stegmaier, P.; Kel, A. & Wingender, E. (2015)
Microarrays, 4(2) pp. 270-286. DOI: https://doi.org/10.3390/microarrays4020270
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2016 | Journal Article
Multi-omics "upstream analysis" of regulatory genomic regions helps identifying targets against methotrexate resistance of colon cancer
Kel, A. E.; Stegmaier, P.; Valeev, T.; Koschmann, J.; Poroikov, V.; Kel-Margoulis, O. V. & Wingender, E. (2016)
EuPA open proteomics, 13 pp. 1-13. DOI: https://doi.org/10.1016/j.euprot.2016.09.002
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2017 | Journal Article |
geneXplainR: An R interface for the geneXplain platform
Stegmaier, P.; Kel, A. E. & Wingender, E. (2017)
The Journal of Open Source Software, 2(18) pp. 412. DOI: https://doi.org/10.21105/joss.00412
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2019 | Journal Article |
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer
Kel, A.; Boyarskikh, U.; Stegmaier, P.; Leskov, L. S.; Sokolov, A. V.; Yevshin, I. & Mandrik, N. et al. (2019)
BMC Bioinformatics, 20(S4). DOI: https://doi.org/10.1186/s12859-019-2687-7
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2021 | Journal Article | Research Paper |
Text mining-based word representations for biomedical data analysis and protein-protein interaction networks in machine learning tasks
Alachram, H.; Chereda, H.; Beißbarth, T. ; Wingender, E. & Stegmaier, P. (2021)
PLoS One, 16(10) art. e0258623. DOI: https://doi.org/10.1371/journal.pone.0258623
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2021 | Journal Article |
Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer
Chereda, H.; Bleckmann, A.; Menck, K.; Perera-Bel, J.; Stegmaier, P.; Auer, F. & Kramer, F. et al. (2021)
Genome Medicine, 13(1) art. 42. DOI: https://doi.org/10.1186/s13073-021-00845-7
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