Author Kollmar, Martin
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2003 | Journal Article |
Identification and phylogenetic analysis of Dictyostelium discoideum kinesin proteins.
Kollmar, M. & Glöckner, G. (2003)
BMC genomics, 4(1) pp. 47-47. DOI: https://doi.org/10.1186/1471-2164-4-47
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2006 | Journal Article |
Thirteen is enough: the myosins of Dictyostelium discoideum and their light chains
Kollmar, M. (2006)
BMC Genomics, 7 art. 183. DOI: https://doi.org/10.1186/1471-2164-7-183
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2006 | Journal Article |
Pfarao: a web application for protein family analysis customized for cytoskeletal and motor proteins (CyMoBase)
Odronitz, F. & Kollmar, M. (2006)
BMC Genomics, 7 art. 300. DOI: https://doi.org/10.1186/1471-2164-7-300
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2007 | Journal Article
Drawing the tree of eukaryotic life based on the analysis of 2,269 manually annotated myosins from 328 species
Odronitz, F. & Kollmar, M. (2007)
Genome Biology, 8(9) pp. R196. DOI: https://doi.org/10.1186/gb-2007-8-9-r196
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2007 | Journal Article |
diArk – a resource for eukaryotic genome research
Odronitz, F.; Hellkamp, M. & Kollmar, M. (2007)
BMC Genomics, 8(1) pp. 103. DOI: https://doi.org/10.1186/1471-2164-8-103
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2008 | Journal Article |
WebScipio: an online tool for the determination of gene structures using protein sequences.
Odronitz, F.; Pillmann, H.; Keller, O.; Waack, S. & Kollmar, M. (2008)
BMC genomics, 9 pp. 422-422. DOI: https://doi.org/10.1186/1471-2164-9-422
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2008 | Journal Article |
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Keller, O.; Odronitz, F.; Stanke, M.; Kollmar, M. & Waack, S. (2008)
BMC Bioinformatics, 9 art. 278. DOI: https://doi.org/10.1186/1471-2105-9-278
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2009 | Journal Article |
Reconstructing the phylogeny of 21 completely sequenced arthropod species based on their motor proteins
Odronitz, F.; Becker, S. & Kollmar, M. (2009)
BMC Genomics, 10 art. 173. DOI: https://doi.org/10.1186/1471-2164-10-173
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2011 | Journal Article |
A holistic phylogeny of the coronin gene family reveals an ancient origin of the tandem-coronin, defines a new subfamily, and predicts protein function
Eckert, C.; Hammesfahr, B. & Kollmar, M. (2011)
BMC Evolutionary Biology, 11(1). DOI: https://doi.org/10.1186/1471-2148-11-268
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2011 | Journal Article |
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio
Hatje, K.; Keller, O.; Hammesfahr, B.; Pillmann, H.; Waack, S. & Kollmar, M. (2011)
BMC Research Notes, 4(1) art. 265. DOI: https://doi.org/10.1186/1756-0500-4-265
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2011 | Journal Article
A novel hybrid gene prediction method employing protein multiple sequence alignments
Keller, O.; Kollmar, M.; Stanke, M. & Waack, S. (2011)
Bioinformatics, 27(6) pp. 757-763. DOI: https://doi.org/10.1093/bioinformatics/btr010
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2012 | Journal Article |
Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML
Kollmar, M.; Lbik, D. & Enge, S. (2012)
BMC Research Notes, 5(1) art. 88. DOI: https://doi.org/10.1186/1756-0500-5-88
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2013 | Journal Article |
GenePainter: a fast tool for aligning gene structures of eukaryotic protein families, visualizing the alignments and mapping gene structures onto protein structures
Hammesfahr, B.; Odronitz, F.; Mühlhausen, S. ; Waack, S. & Kollmar, M. (2013)
BMC Bioinformatics, 14 art. 77. DOI: https://doi.org/10.1186/1471-2105-14-77
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2014 | Journal Article |
Spaced words and kmacs: fast alignment-free sequence comparison based on inexact word matches
Horwege, S.; Lindner, S.; Boden, M.; Hatje, K.; Kollmar, M.; Leimeister, C.-A. & Morgenstern, B. (2014)
Nucleic Acids Research, 42(W1) pp. W7-W11. DOI: https://doi.org/10.1093/nar/gku398
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2016 | Journal Article
Fine-Tuning Motile Cilia and Flagella: Evolution of the Dynein Motor Proteins from Plants to Humans at High Resolution
Kollmar, M. (2016)
Molecular Biology and Evolution, 33(12) pp. 3249-3267. DOI: https://doi.org/10.1093/molbev/msw213
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2016 | Journal Article
Axonopathy in the Central Nervous System Is the Hallmark of Mice with a Novel Intragenic Null Mutation of Dystonin
Seehusen, F.; Kiel, K.; Jottini, S.; Wohlsein, P.; Habierski, A.; Seibel, K. & Vogel, T. et al. (2016)
Genetics, 204(1) pp. 191-+. DOI: https://doi.org/10.1534/genetics.116.186932
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2017 | Journal Article |
Distribution and evolution of stable single alpha-helices (SAH domains) in myosin motor proteins
Simm, D. ; Hatje, K. & Kollmar, M. (2017)
PLoS ONE, 12(4) art. e0174639. DOI: https://doi.org/10.1371/journal.pone.0174639
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2018 | Book Chapter
Identifying Sequenced Eukaryotic Genomes and Transcriptomes with diArk
Kollmar, M.& Simm, D. (2018)
In:Kollmar, Martin (Ed.), Eukaryotic Genomic Databases pp. 1-19. New York, NY: Springer New York. DOI: https://doi.org/10.1007/978-1-4939-7737-6_1
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2019 | Book Chapter
Predicting Genes in Closely Related Species with Scipio and WebScipio
Kollmar, M. (2019)
In:Kollmar, Martin (Ed.), Methods in Molecular Biology Gene Prediction : Methods and Protocols pp. 193-206. New York, NY: Springer New York. DOI: https://doi.org/10.1007/978-1-4939-9173-0_11
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