Author Klumpp, Stefan
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2016 | Journal Article
Asymmetric exclusion process with a dynamic roadblock and open boundaries
Sahoo, M. & Klumpp, S. (2016)
Journal of Physics A Mathematical and Theoretical, 49(31) art. 315001. DOI: https://doi.org/10.1088/1751-8113/49/31/315001
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2016 | Review |
Magnetotactic bacteria Magnetic navigation on the microscale
Klumpp, S.& Faivre, D. (2016)
The European Physical Journal Special Topics, 225(11-12) pp. 2173-2188.
Heidelberg: Springer. DOI: https://doi.org/10.1140/epjst/e2016-60055-y
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2016 | Journal Article
Facilitated diffusion in the presence of obstacles on the DNA
Gomez, D. & Klumpp, S. (2016)
Physical Chemistry Chemical Physics, 18(16) pp. 11184-11192. DOI: https://doi.org/10.1039/c6cp00307a
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2016 | Journal Article |
Segregation of prokaryotic magnetosomes organelles is driven by treadmilling of a dynamic actin-like MamK filament
Toro-Nahuelpan, M.; Mueller, F. D.; Klumpp, S.; Plitzko, J. M.; Bramkamp, M. & Schueler, D. (2016)
BMC Biology, 14 art. 88. DOI: https://doi.org/10.1186/s12915-016-0290-1
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2017 | Journal Article |
Modeling sRNA-Regulated Plasmid Maintenance
Gong, C. C. & Klumpp, S. (2017)
PLoS ONE, 12(1) art. e0169703. DOI: https://doi.org/10.1371/journal.pone.0169703
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2017 | Journal Article
Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism
Reuss, D. R.; Altenbuchner, J.; Maeder, U.; Rath, H.; Ischebeck, T.; Sappa, P. K. & Thuermer, A. et al. (2017)
Genome Research, 27(2) pp. 289-299. DOI: https://doi.org/10.1101/gr.215293.116
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2020 | Journal Article
Selection for Function: From Chemically Synthesized Prototypes to 3D‐Printed Microdevices
Bachmann, F.; Giltinan, J.; Codutti, A.; Klumpp, S.; Sitti, M. & Faivre, D. (2020)
Advanced Intelligent Systems, 2(10) art. 2000078. DOI: https://doi.org/10.1002/aisy.202000078
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2021 | Journal Article
Opportunities and utilization of branching and step-out behavior in magnetic microswimmers with a nonlinear response
Bachmann, F.; Giltinan, J.; Codutti, A.; Klumpp, S.; Sitti, M. & Faivre, D. (2021)
Applied Physics Letters, 118(17) pp. 174102. DOI: https://doi.org/10.1063/5.0045454
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2021 | Journal Article
Quasi-essentiality of RNase Y in Bacillus subtilis is caused by its critical role in the control of mRNA homeostasis
Benda, M.; Woelfel, S.; Faßhauer, P.; Gunka, K.; Klumpp, S.; Poehlein, A. & Kálalová, D. et al. (2021)
Nucleic Acids Research, 49(12) pp. 7088-7102. DOI: https://doi.org/10.1093/nar/gkab528
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2021 | Journal Article
Enhanced diffusion of a tracer particle in a lattice model of a crowded active system
Abbaspour, L. & Klumpp, S. (2021)
Physical Review E, 103(5). DOI: https://doi.org/10.1103/PhysRevE.103.052601
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2021 | Journal Article |
Stokesian dynamics simulations of a magnetotactic bacterium
Mohammadinejad, S.; Faivre, D. & Klumpp, S. (2021)
The European Physical Journal. E, Soft Matter, 44(3). DOI: https://doi.org/10.1140/epje/s10189-021-00038-5
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2021 | Journal Article |
Orientation fluctuations in magnetotactic swimming
Smyk, S.; Telezki, V.; Riepl, J.; Hayes, J. & Klumpp, S. (2021)
European Physical Journal Special Topics, 230(4) pp. 1099-1103. DOI: https://doi.org/10.1140/epjs/s11734-021-00078-0
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2021 | Journal Article | Research Paper |
Vimentin intermediate filaments stabilize dynamic microtubules by direct interactions
Schaedel, L.; Lorenz, C.; Schepers, A. V.; Klumpp, S. & Köster, S. (2021)
Nature Communications, 12(1) art. 3799. DOI: https://doi.org/10.1038/s41467-021-23523-z
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2021 | Journal Article | Research Paper
Reflections on COVID-19–Induced Online Teaching in Biophysics Courses
Klumpp, S.; Köster, S. ; Pawsey, A. C.; Lips, Y.; Wenderoth, M. & Klein, P. (2021)
The Biophysicist, 2(2) pp. 20-22. DOI: https://doi.org/10.35459/tbp.2021.000183
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2022 | Journal Article | Research Paper |
Synchronization of a genetic oscillator with the cell division cycle
Knotz, G.; Parlitz, U. & Klumpp, S. (2022)
New Journal of Physics, 24(3). DOI: https://doi.org/10.1088/1367-2630/ac5c16
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2023 | Journal Article
Transcription-translation coupling: Traveling a road under construction
Klumpp, S. (2023)
Biophysical Journal, 122(1) pp. 1-3. DOI: https://doi.org/10.1016/j.bpj.2022.12.006
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2023 | Journal Article
Theoretical efficiency limits and speed-efficiency trade-off in myosin motors
Vilfan, A. & Šarlah, A. (2023)
PLOS Computational Biology, 19(7) art. e1011310. DOI: https://doi.org/10.1371/journal.pcbi.1011310
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2023 | Journal Article
Effects of direction reversals on patterns of active filaments
Abbaspour, L.; Malek, A.; Karpitschka, S. & Klumpp, S. (2023)
Physical Review Research, 5(1). DOI: https://doi.org/10.1103/PhysRevResearch.5.013171
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2023 | Journal Article
The motility-matrix production switch in Bacillus subtilis —a modeling perspective
Dannenberg, S.; Penning, J.; Simm, A. & Klumpp, S. (2023)
Journal of Bacteriology, art. e00047-23. DOI: https://doi.org/10.1128/jb.00047-23
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2023 | Journal Article | Research Paper
Keratin filament mechanics and energy dissipation are determined by metal-like plasticity
Lorenz, C.; Forsting, J.; Style, R. W.; Klumpp, S. & Köster, S. (2023)
Matter,. DOI: https://doi.org/10.1016/j.matt.2023.04.014
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2024 | Journal Article
Decomposing bulk signals to reveal hidden information in processive enzyme reactions: A case study in mRNA translation
Haase, N.; Holtkamp, W.; Christ, S.; Heinemann, D.; Rodnina, M. V. & Rudorf, S. (2024)
PLoS Computational Biology, 20(3) art. e1011918. DOI: https://doi.org/10.1371/journal.pcbi.1011918
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